PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00386g00511.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 458aa    MW: 48016.9 Da    PI: 8.7129
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00386g00511.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.63.8e-122044327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                              ++ C +++rtG+C yG+rC+F+H++
  Peaxi162Scf00386g00511.1 20 EPDCIYYLRTGFCGYGSRCRFNHPR 44
                              799********************96 PP

2zf-CCCH382.7e-126590227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                              +++ C++++rtG Ck+G++Ck++H++
  Peaxi162Scf00386g00511.1 65 GQPVCQYYMRTGMCKFGASCKYHHPR 90
                              5789********************96 PP

3zf-CCCH34.34e-11111136227
                               -S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++C+++ +tG+Ck+G +CkF+H++
  Peaxi162Scf00386g00511.1 111 GEKECSYYVKTGQCKFGITCKFHHPQ 136
                               7899********************97 PP

4zf-CCCH36.58.4e-12281306126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +++++C++++++G CkyG++C+++H+
  Peaxi162Scf00386g00511.1 281 PGQPECQYYMKYGDCKYGSSCRYHHP 306
                               5789*********************9 PP

5zf-CCCH35.71.4e-11329353327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                ++C+++a++G Ck+G++CkF H++
  Peaxi162Scf00386g00511.1 329 APICSHYAQNGVCKFGPSCKFDHPM 353
                               589********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.5E-61744IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8961745IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-92044IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-62146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-52344IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-66390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.8456391IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-66490IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-96590IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-56890IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5109136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371109137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6111137IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8111136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-4115135IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5280307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.07280308IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-9282306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5284308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6325352IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7326353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878326354IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-9329353IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5331351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MWQLTLGNTG PESYPERPNE PDCIYYLRTG FCGYGSRCRF NHPRDRNSVL GAMRATGGEY  60
PERMGQPVCQ YYMRTGMCKF GASCKYHHPR QGGGSPAPVT VNIYGYPLRP GEKECSYYVK  120
TGQCKFGITC KFHHPQPAGA QVPAPAAGPG PMTAPAAVPA PHIYPAVQSP SVQSAQQYGV  180
VSGNWPVARP TLLPGSYIPG TYGSMLLPPG MVPLPGWTPY PAPVSPVPSQ STQPAAAAGP  240
IYGLSQLSPS APAYTGPYLS VASSGGPSSS SQKEHAFPER PGQPECQYYM KYGDCKYGSS  300
CRYHHPTEWS GPKTSFILSA MGLPLRPGAP ICSHYAQNGV CKFGPSCKFD HPMGMSYSPS  360
ASSLADMAIA PYPVGSSIGT LAPSSSSSDL RPELASGSGR DAFSTQISSM STSSGSVGSM  420
FSKSGPASHS GIQQSVQSSN PSSGSSSSGH GGEARTSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2437121e-126AC243712.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44j2 map 1, complete sequence.
GenBankHG9755131e-126HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229205.10.0PREDICTED: zinc finger CCCH domain-containing protein 34
SwissprotQ84W911e-160C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLK4AX030.0K4AX03_SOLLC; Uncharacterized protein
STRINGSolyc01g067550.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-119C3H family protein